All posts by sschnabes

Anusha Shankar | 2.6.20

On Thursday, we were able to listen to a live presentation with Anusha Shankar who is a National Geographic Explorer that is studying animals, specifically rats and hummingbirds. She shared with us information about her work over the last few years which was really interesting to see her change in environments and animals. Currently, she is in Alaska studying rats for seasonal depression and seeing if this is similar for humans. It was interesting to see how the rats adapted to the environment that they were put in and how the environment that they were in previously affected the one that they were currently in. The first conditions that the rats were put under were the normal 12 hours of light and 12 hours of dark, but when the lights were only on for a few hours you could see a substantial difference with their activity. For a lot of the rats though, they were active 12 hours after the lights turned off as if they were expected for the lights to turn back on. Rats, like humans, are more active in the day time, or when there is light, but then go to sleep once it is dark outside. 

Another study that she had done was on hummingbirds and how they utilize their energy. She traveled to Equador, which is relatively close to the equator where there are hotter temperatures. Hummingbirds spend their energy fairly quickly but can barely store it, which means that they have to eat and get energy from nectar regularly or else they can die within 2 hours. To prevent themselves from dying during the night, hummingbirds go into a sleep stage called torpor which shuts their bodies down and goes cold to preserve energy. She was able to study the birds sleeping habits with infrared light and by monitoring their bodiesโ€™ temperature from day to night. I especially found her research on hummingbirds interesting because I learned something new about hummingbirds, which is a topic I never really thought about looking at before.

Here is one of Anusha Shankar’s videos of hummingbirds using infrared to see if they are in torpor or not

To learn more about Anusha Shankar’s work with hummingbirds, you can click here.

Works Cited
Shankar, Anusha. โ€œWhy I Am Obsessed with Hummingbird Pee… and Torpor.โ€ National Geographic Society Newsroom, 23 Feb. 2018, blog.nationalgeographic.org/2018/02/06/why-i-am-obsessed-with-hummingbird-pee-and-torpor/.

YouTube, YouTube, http://www.youtube.com/watchtime_continue=29&v=8ObONmJ4VU8&feature=emb_title.

The Future of Technology | 2.4.20

As our world changes, so do the technology that we use every day. Recently in AP Biology, we have taken a look at new scientific technologies that have been developed to hopefully one-day help find the solution to diseases that we never even imagined had a possibility of being cured. Some of these technologies have the possibility to revolutionize medicine if scientists and doctors continue to work on developing and solving some of the remaining issues. But along with these many new improvements, there are some ethical issues that are brought up with each topic. Who gets to decide whatโ€™s right or wrong? Or who gets this one thing while others donโ€™t? Regardless of what happens today, these ethical questions will always need to be analyzed in order to come up with a solution that will benefit everyone and not just a small population of people. For now, these technologies, which include gene therapy, forensic analysis, and so much more are being worked on to try and help people in the future. 

While learning about biotechnology was very interesting, it was nothing like actually performing a lab that made bacteria grow and glow. In this experiment, we used genetic engineering, which is adding a desired gene from one organism into another organism, to add a plasmid into E.coli. The plasmid contained three important genes ampr, the gene that codes for beta-lactamase, an enzyme that breaks down ampicillin, araC, the gene that codes for a repressor protein that binds to the operator in the absence of arabinose, and the green fluorescent protein (GFP) gene, that codes for GFP and makes the bacteria glow under UV light. The work was tedious as we used micropipettes to measure the exact amounts of each substance going into the tubes, and unfortunately, there was a one in one million chance that the bacteria would gain the plasmid. Luckily, we were working with many bacteria and were able to observe colonies that formed and colonies that glowed. We tested the bacteria on three different plates, one with just LB or bacteria nutrients, one with LB and ampicillin, and one with LB, ampicillin, and arabinose. The only plate that we observed to glow was the third one with LB, ampicillin, and arabinose. This is because the arabinose in the plate bound to the repressor protein that was preventing the GFP gene from being read. It was really interesting to see the outcome and overall a really fun experiment to do. Check out some of the glowing art drawings we did and you can see the difference between a plate that had glowing bacteria versus one that didnโ€™t. 

Here is what the glowing bacteria looks like (drawn by Callie Malone)
Here is the bacteria that I drew that didn’t glow

Along with learning about technology and doing experiments, we were able to listen listen to the guest speaker, Mana Anver, who worked in a lab that was using CRISPR on zebrafish to determine the right medication for a type of disease. It was really interesting to hear about her experience that what work she did in a lab and how CRISPR and Cas9 were used to essentially โ€œbreakโ€ the zebra fishes genes in order to mimic Dravet Syndrome in humans. CRISPR-Cas9 comes from bacteria and can be used to knock out or edit sequences in our genome that are causing bad mutations, like diseases. By mimicking this syndrome, she was able to run tests on which drugs were had the best results and had the least side effects. 

here is a quick video if you want to know a little bit more about how CRISPR works

Overall, this unit was filled with so much fascinating information that will hopefully one day be able to help people in the future. 

Works Cited
YouTube, YouTube, http://www.youtube.com/watch?v=UKbrwPL3wXE.

Forensic Evidence | 1.15.20

Technology has become a vital part of our everyday lives and has had many breakthroughs that have really helped the world thrive. One specific area where technology is crucial is within law enforcement and forensics. In this presentation that I made with my partner, you can see how technology is used in forensic evidence and a recent breakthrough to help police identify suspects or bodies.

Never Give Up | 1.8.20

Have you ever had a dream? Well like Rapunzelโ€™s song โ€œI Have a Dreamโ€ in the Disney movie Tangled, she shows that all people have different kinds of dreams. While Rapunzelโ€™s dream wasnโ€™t so ambitious, there are people out there that do have dreams that are seemingly impossible to achieve. One person that accomplishes her dream of swimming from Cuba to Florida after countless tries and at the age of 64 is Diana Nyad. Although after turning 60, she was told by every doctor and physical trainer that she went to that her dream was impossible. Regardless of this, she decided that she was not going to give up on her dream and was going to finally accomplish swimming from Cuba to Florida on her 5th attempt. In her TedTalk in 2013, she describes the difficulties she had faced: hallucinations, jellyfish, sharks, seasickness, and much more. But she also talks about the amazing team hat she had that helped her to conquer the journey and her to achieve her goal. Despite everything that she went through and the hardships that she was facing closer to the end of the swim, she shows the necessity of having a positive, open mind with the mantras she states to herself to help her push and finish her 100-mile journey.

Diana Nyad’s Ted Talk

A dream of mine, although may seem like many peoples, is to just get into a good college. Although it seems like a lot of peopleโ€™s dreams in high school, it is also something that I am awaiting. I have had a lot of pressure to get into a good college since middle school and even to do well in high school because of my siblings. Especially since I have to follow behind my brother, I have been expected to do as well as him in everything. It is very difficult especially since he was star athlete, valedictorian that took 4 APs or honors classes each year. I have always felt that I need to compare myself to him which has really brought my self-esteem down in school. Even though my parents tell me that we are different people and that I shouldnโ€™t compare myself to him, I still feel like I need to because they expect me to do as well as he did. After college, I donโ€™t know what I want to do career-wise,ย  but I hope I can figure that out and will work hard to achieve that. I think that Diana Nyadโ€™s story is truly amazing and inspiring. Despite the four other times that she was unable to accomplish her dream, she never gave up and had the support of her team and best friend which helped her to finish her journey. Her story has inspired me to never give up and work for what I want regardless of what anyone tells me.

Works Cited
Nyad, Diana. โ€œNever, Ever Give Up.โ€ TED, http://www.ted.com/talks/diana_nyad_never_ever_give_up#t-729328.

Semester 1 | 1.7.20

These past 5 months in AP Biology has been rocky, challenging, and rewarding all at once. Learning new content or advancing knowledge on previous topics at a deeper level and at a faster pace can be difficult. Because of the fast pace of the class, some topics were much more difficult to understand. Luckily with the help of my teammates and teacher, I was able to grasp the essential topics that are covered in this course. Some topics that first semester that we went into depth include properties of water, cell signaling, photosynthesis, cell respiration, and much more. Along which these topics, we also looked at how everything in biology is connected to each other. We did labs, projects, blog posts, and other interactive things to help us build these connections and understand the difficult material. Overall, I think that class time on hard topics was really crucial for me to help me grasp what we were learning and will hopefully be useful this next semester. 

We not only learned more advanced topics in biology, but we also explored our use of technology by creating a digital portfolio for blog posts and creating different types of videos like stop-motion animation. This digital portfolio allows me to share my experience with what we learn, do, and watch in class and reflect on how these things help me to make connections and understand what we are learning. I am also able to share with the audience my interest in biology and more about me. I am also able to share some pictures from the places that I have traveled during this year. 

Overall I think that the last semester has been really rewarding and I am looking forward to what the new year has in store for us. I am excited to learn more in AP biology and see where this course takes my teammates and me.

Strawberry DNA Extraction | 12.8.19

Have you ever heard of extracting DNA from a strawberry? While this may seem very difficult, it really isn’t. This experiment was fun and easy since it only required a few things that you could find at home. This includes water, salt, dish soap, strawberries, and cold isopropyl alcohol. To learn more about how DNA is extracted from the strawberry and why the process we used work watch the video below. Hope you enjoy!

Chromatography | 10.24.19

Determining the Pigments That Absorb Light in Photosynthesis of a Green Leaf and a Non-Green Leaf by Using Chromatography

PURPOSE
To use chromatography to identify and isolate and compare the main pigments that absorb light for photosynthesis in green and non-green leaves.

BACKGROUND:
Photosynthesis is a process that all life on Earth depends on as photosynthesis provides food for plants and oxygen for many of the living organisms in the world. Photosynthesis requires pigments, which give plants their color because pigments absorb light of a particular wavelength that is used in the first phases of photosynthesis. Two major pigments that are important in photosynthesis are chlorophyll a and chlorophyll b, which give many plants their green color. Chromatography is a technique that can separate pigments in plant cells that will allow different pigments to be identified. The pigments in chromatography are measured by their relative mobility factor or Rf, which compares the distance that the solute traveled to the distance that the solvent traveled. By using a green leaf and a non-green leaf, different pigments are able to be determined by the Rf value that is measured and the different colors that result on the chromatography paper.

HYPOTHESIS:
If the main pigments identified in a non-green leaf and green leaf are different, then the colors on the chromatogram and the Rf values will be different. 

DATA:

The chromatogram collected from a green leaf
The chromatogram collected from a non-green leaf

QUESTIONS:

  1. What is the basic importance of chromatography? 
    The basic importance of chromatography is that chromatography identifies substances by separating compounds in a mixture. Specifically in this lab, chromatography paper is used to identify different pigments in green leaves and non-green leaves. 
  2. What factors allow chromatography to happen? 
    The factors that allow chromatography to happen are the chromatography paper, solute, solvent, the amount of pigment transferred onto the paper, the attraction of solute to a solvent to chromatography paper, molecule size, time, and the amount debris left on the pencil line.
  3. What purpose does the chromatography paper have on this experiment? 
    The purpose of chromatography paper has in the experiment is that the chromatography paper allows scientists to identify pigments by calculating the Rf, which measures the distance the solvent and the solute diffuse up the paper. 
  4. What is the purpose of the solvent in this experiment? 
    The purpose of the solvent in the experiment is to allow the pigment to diffuse up the chromatography paper and is part of the formula for calculating the Rf. The solute moves up the paper based on the soluteโ€™s attraction to the solvent
  5. What does the Rf value stand for? 
    Rf value stands for the relative mobility factor. The formula for the relative mobility factor is the distance the solute traveled divided by the distance the solvent traveled
  6. How do you think the Rf value is useful to scientists?
    The Rf value is useful to scientists because the Rf value helps scientists to identify pigments in plants. 
  7. What does Dunknown signify? 
    Dunknown signifies the distance that the solute diffuses up the paper. 
  8. What does Dsolvent signify? 
    Dsolvent signifies the distance that the solvent diffuses up the paper. 
  9. How many pigments were you able to identify from the GREEN leaf chromatogram?
    Two pigments were able to be identified from the green leave chromatogram. 
  10. How did a GREEN leaf chromatogram compare to a NON-GREEN leaf chromatogram?
    The non-green leaf chromatogram only had one identifiable pigment, while the green leaf chromatogram had two. The green leaf also had pigments that looked like a green and yellow color, while the non-green leaf presented a light pink color. Also, on the chromatogram for the non-green leaf, the chromatogram did not display one distinct area where the solute traveled to, while the green leaf did. 
  11. What else did you find out about pigments and photosynthesis?
    There are multiple types of pigments that can be distinguished in the chromatograms collected. Depending on the prominence of the pigment in photosynthesis, the color displayed on the chromatogram will be darker for more prominent pigments. The Rf values that are calculated will stay relatively the same if all of the variables are kept the same. 
  12. What is one more question you still have?
    How did scientists initially determine the specific Rf values of pigments?

Cell Membranes | 11.8.19

During season 3, we focused on the cell structure and function. One big part of this was learning about the cell membrane, which is semi-permeable so the cell membrane only lets in certain particles. This means that we learned a lot about the different forms of transportation for particles inside and outside the cell, which includes phagocytosis, pinocytosis, and exocytosis.

To learn and understand the functions of the cell membrane, the class was split into different groups to make their own sketch note drawing. Below is the edited version of the project that my group and I did.

Here is a bigger picture of what’s in the middle so you can better see our drawing and labels

Meiosis in Motion | 11.20.19

For this season, my partner, Chloe and I, made a stop motion animation of the process of meiosis. Meiosis is the process where sex cells, also known as gametes, divide from one diploid cell that has 2n chromosomes to 4 haploid cells that have n chromosomes. Meiosis occurs in two stages, meiosis one and meiosis two. In both meiosis one and meiosis two, there are 4 different phases in each. This means that there are two stages of Prophase, Metaphase, Anaphase, and Telophase. Unlike mitosis, meiosis creates 4 genetically different cells. To create 4 genetically different cells, the chromosomes cross over and exchange genetic information in Prophase I.

Reflection on the Process
Overall, I think that making a stop motion is very time consuming and difficult. You have to take so many different pictures and move your product so little to actually make the video smooth, so sometimes it can be frustrating. I think that our product turned out pretty good, but probably could have been better with more time and more experience with the editing app. I think that overall though our product held a lot of good information and will hopefully be understandable with the pictures.